Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermodesulforhabdus norvegica DSM 9990 (GCF_900114975.1)

Found 26 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thermodesulforhabdus norvegica DSM 9990, or try another query

mce BM091_RS09535 SAMN05660836_01905 WP_093395319.1: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila

30% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

109076-109588 (frame +2) on NZ_FOUU01000006.1 Thermodesulforhabdus norvegica strain DSM 9990, whole genome shotgun sequence
is similar to:
PaperBLAST

LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila
Also see hits to annotated proteins above

29% id,
35% cov

Q6KZ98: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Picrophilus torridus

26% id,
39% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory