Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermodesulforhabdus norvegica DSM 9990 (GCF_900114975.1)

Found 9 curated entries in PaperBLAST's database that match '2.6.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermodesulforhabdus norvegica DSM 9990, or try another query

BM091_RS07270 SAMN05660836_01459 WP_093394637.1: branched-chain amino acid aminotransferase
is similar to:
PaperBLAST

ilvK / P39576: branched-chain amino acid aminotransferase (EC 2.6.1.42; EC 2.6.1.6) from Bacillus subtilis

58% id,
95% cov

ilvE / O31461: branched-chain amino acid aminotransferase (EC 2.6.1.6; EC 2.6.1.42) from Bacillus subtilis

55% id,
96% cov

BAT1 / P38891: branched-chain amino acid aminotransferase subunit (EC 2.6.1.42; EC 2.6.1.6) from Saccharomyces cerevisiae

44% id,
91% cov

More...

BM091_RS08495 SAMN05660836_01698 WP_093394992.1: aminotransferase class IV
is similar to:
PaperBLAST

ilvE / A6UWA0: branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Methanococcus aeolicus

33% id,
92% cov

ilvE / O86428: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Pseudomonas aeruginosa

28% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory