Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermodesulforhabdus norvegica DSM 9990 (GCF_900114975.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermodesulforhabdus norvegica DSM 9990, or try another query

thrC BM091_RS08805 SAMN05660836_01760 WP_093395086.1: threonine synthase
is similar to:
PaperBLAST

DvMF_1945: threonine synthase (EC 4.2.3.1) from Desulfovibrio vulgaris

58% id,
95% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

35% id,
91% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

33% id,
92% cov

More...

BM091_RS06235 SAMN05660836_01255 WP_093394327.1: cysteine synthase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

27% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory