Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermodesulforhabdus norvegica DSM 9990 (GCF_900114975.1)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermodesulforhabdus norvegica DSM 9990, or try another query

dapA BM091_RS13075 SAMN05660836_02605 WP_093396409.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii

55% id,
100% cov

O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus

54% id,
99% cov

DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis
Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis

52% id,
100% cov

More...

dapB BM091_RS13070 SAMN05660836_02604 WP_093396407.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

30% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory