Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfoscipio geothermicus DSM 3669 (GCF_900115975.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Desulfoscipio geothermicus DSM 3669, or try another query

serA BM299_RS17355 SAMN05660706_14124 WP_092487414.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 46% id,
100% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 43% id,
99% cov

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

 40% id,
99% cov

More...

BM299_RS11865 SAMN05660706_11910 WP_092484432.1: hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 35% id,
92% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 42% id,
67% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 29% id,
96% cov

More...

BM299_RS04760 SAMN05660706_1066 WP_092482325.1: hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 31% id,
97% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 33% id,
80% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 36% id,
73% cov

More...

BM299_RS05065 SAMN05660706_10670 WP_092482380.1: adenosylhomocysteinase
is similar to:		 PaperBLAST

A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris

 25% id,
57% cov

SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana
O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana

 27% id,
34% cov

SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana
O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana

 26% id,
33% cov

More...

BM299_RS04225 SAMN05660706_10543 WP_092482222.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 33% id,
14% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 33% id,
13% cov

BM299_RS10985 SAMN05660706_1174 WP_092483962.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 28% id,
16% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 33% id,
12% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 30% id,
13% cov

More...

BM299_RS01580 SAMN05660706_10231 WP_092481713.1: prephenate dehydrogenase
is similar to:		 PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 36% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory