Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfoscipio geothermicus DSM 3669 (GCF_900115975.1)

Found 8 curated entries in PaperBLAST's database that match '1.13.12.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfoscipio geothermicus DSM 3669, or try another query

BM299_RS09480 SAMN05660706_11394 WP_092483372.1: NAD(P)-binding protein
is similar to:
PaperBLAST

Pf6N2E2_4778: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

38% id,
20% cov

AO356_14230: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

38% id,
20% cov

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

35% id,
20% cov

More...

BM299_RS12745 SAMN05660706_12143 WP_092484887.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

41% id,
11% cov

Pf6N2E2_4778: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

40% id,
11% cov

AO356_14230: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

40% id,
11% cov

BM299_RS15135 SAMN05660706_12923 WP_092486233.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

40% id,
11% cov

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

40% id,
11% cov

davB / B3IVI6: L-lysine monooxygenase monomer (EC 1.13.12.2) from Pseudomonas putida

40% id,
11% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory