Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfoscipio geothermicus DSM 3669 (GCF_900115975.1)

Found 11 curated entries in PaperBLAST's database that match '5.4.3.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfoscipio geothermicus DSM 3669, or try another query

ablA BM299_RS06535 SAMN05660706_10898 WP_092482666.1: lysine 2,3-aminomutase
is similar to:
PaperBLAST

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

63% id,
96% cov

KAMA_FUSNN / Q8RHX4: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Fusobacterium nucleatum

61% id,
95% cov

ABLA_METMA / Q8PYC9: L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanosarcina mazei
Q8PYC9: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanosarcina mazei

54% id,
95% cov

More...

eam BM299_RS08870 SAMN05660706_11276 WP_092483144.1: glutamate 2,3-aminomutase
is similar to:
PaperBLAST

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

51% id,
86% cov

ABLA_METMA / Q8PYC9: L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanosarcina mazei
Q8PYC9: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanosarcina mazei

49% id,
86% cov

KAMA_FUSNN / Q8RHX4: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Fusobacterium nucleatum

50% id,
85% cov

More...

BM299_RS00240 SAMN05660706_10146 WP_092481457.1: KamA family radical SAM protein
is similar to:
PaperBLAST

G3F9W8: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanocalculus chunghsingensis

44% id,
79% cov

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

41% id,
83% cov

G3F9X2: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanohalophilus portucalensis

42% id,
80% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory