Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 26 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

mce BUB04_RS00980 SAMN02745206_00192 WP_073036080.1: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

Psest_3514: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas stutzeri

35% id,
21% cov

Q09PG8: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from uncultured soil

35% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

213100-213561 (frame +1) on NZ_FQVB01000003.1 Desulfacinum infernum DSM 9756, whole genome shotgun sequence
is similar to:
PaperBLAST

Psest_3514: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas stutzeri
Also see hits to annotated proteins above

28% id,
34% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory