Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 3 curated entries in PaperBLAST's database that match '2-deoxy-D-ribonate 3-dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

BUB04_RS05975 SAMN02745206_01192 WP_073037918.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

33% id,
95% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

29% id,
95% cov

BUB04_RS09810 SAMN02745206_01973 WP_073038838.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

30% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory