Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

BUB04_RS09880 SAMN02745206_01987 WP_073038878.1: corrinoid protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 47% id,
90% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 42% id,
25% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 41% id,
25% cov

More...

BUB04_RS16600 SAMN02745206_03363 WP_073041571.1: corrinoid protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 45% id,
88% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 44% id,
25% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 44% id,
25% cov

More...

BUB04_RS10855 SAMN02745206_02186 WP_073039243.1: corrinoid protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 38% id,
91% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 43% id,
25% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 42% id,
25% cov

More...

BUB04_RS06935 SAMN02745206_01387 WP_073038260.1: corrinoid protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 39% id,
86% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 42% id,
25% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 41% id,
25% cov

More...

BUB04_RS15150 SAMN02745206_03068 WP_073040997.1: cobalamin-dependent protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 37% id,
83% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 33% id,
29% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 39% id,
25% cov

More...

BUB04_RS06925 SAMN02745206_01385 WP_073038257.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 32% id,
94% cov

BUB04_RS13150 SAMN02745206_02652 WP_073040264.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 31% id,
93% cov

BUB04_RS09875 SAMN02745206_01986 WP_073038876.1: methyltetrahydrofolate cobalamin methyltransferase
is similar to:		 PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 40% id,
67% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 34% id,
32% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 33% id,
31% cov

More...

BUB04_RS15165 SAMN02745206_03071 WP_073041003.1: methyltetrahydrofolate cobalamin methyltransferase
is similar to:		 PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 39% id,
66% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
32% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 35% id,
31% cov

More...

BUB04_RS06930 SAMN02745206_01386 WP_073038259.1: dihydropteroate synthase
is similar to:		 PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 36% id,
67% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 34% id,
31% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 32% id,
32% cov

More...

BUB04_RS10900 SAMN02745206_02197 WP_073039254.1: methyltetrahydrofolate cobalamin methyltransferase
is similar to:		 PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 35% id,
67% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 32% id,
32% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 32% id,
31% cov

More...

BUB04_RS07895 SAMN02745206_01583 WP_084076303.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 31% id,
75% cov

BUB04_RS10930 SAMN02745206_02203 WP_073039262.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 37% id,
62% cov

BUB04_RS06955 SAMN02745206_01391 WP_084076273.1: cobalamin-dependent protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 27% id,
82% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
25% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
26% cov

More...

BUB04_RS00965 SAMN02745206_00189 WP_073036074.1: cobalamin B12-binding domain-containing protein
is similar to:		 PaperBLAST

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 31% id,
14% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 31% id,
14% cov

METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli
MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli
metH: methionine synthase; EC 2.1.1.13 from Escherichia coli
metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli

 27% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory