Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 5 curated entries in PaperBLAST's database that match '2.1.3.11' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

argF BUB04_RS11055 SAMN02745206_02228 WP_073039304.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

29% id,
88% cov

BUB04_RS04235 SAMN02745206_00843 WP_073037265.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

26% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory