Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.96' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

BUB04_RS06460 SAMN02745206_01289 WP_084076256.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

34% id,
93% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

34% id,
88% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

33% id,
86% cov

More...

gabT BUB04_RS08145 SAMN02745206_01633 WP_073038495.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

30% id,
89% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

31% id,
86% cov

GATP1_SOLLC / Q84P54: Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP1 / Q84P54: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

31% id,
82% cov

More...

gabT BUB04_RS02225 SAMN02745206_00443 WP_073036559.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

31% id,
86% cov

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

29% id,
92% cov

GATP1_SOLLC / Q84P54: Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP1 / Q84P54: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

31% id,
80% cov

More...

BUB04_RS08170 SAMN02745206_01638 WP_073038500.1: putrescine aminotransferase
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

29% id,
91% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

30% id,
86% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

30% id,
83% cov

More...

BUB04_RS11050 SAMN02745206_02227 WP_073039302.1: acetylornithine transaminase
is similar to:
PaperBLAST

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

30% id,
88% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

30% id,
85% cov

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa

29% id,
82% cov

More...

BUB04_RS10885 SAMN02745206_02194 WP_084076407.1: acetyl ornithine aminotransferase family protein
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

29% id,
92% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

31% id,
84% cov

GATP3_SOLLC / Q84P52: Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum
Q84P52: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

30% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory