Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum infernum DSM 9756 (GCF_900129305.1)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfacinum infernum DSM 9756, or try another query

acnA BUB04_RS02125 SAMN02745206_00423 WP_073036524.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

58% id,
98% cov

Q9NFX2: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

54% id,
99% cov

ACOHC_CAEEL / Q23500: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Gex-3-interacting protein 22; EC 4.2.1.3 from Caenorhabditis elegans
Q23500: aconitate hydratase (EC 4.2.1.3) from Caenorhabditis elegans

54% id,
98% cov

More...

leuC BUB04_RS15010 SAMN02745206_03040 WP_245795212.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

24% id,
56% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

28% id,
43% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

26% id,
42% cov

More...

BUB04_RS06990 SAMN02745206_01398 WP_073038272.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

26% id,
50% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

26% id,
50% cov

Q9P7D4: aconitate hydratase (EC 4.2.1.3) from Schizosaccharomyces pombe

27% id,
43% cov

More...

leuD BUB04_RS15005 SAMN02745206_03039 WP_073040947.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACOHC_RABIT / Q01059: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Oryctolagus cuniculus

30% id,
18% cov

D3GQL0: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

32% id,
15% cov

ACOHC_HUMAN / P21399: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Homo sapiens
P21399: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

27% id,
18% cov

More...

BUB04_RS06995 SAMN02745206_01399 WP_073038273.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

Q9RIL1: aconitate hydratase (EC 4.2.1.3) from Streptomyces viridochromogenes

27% id,
18% cov

ACON_RAT / Q9ER34: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Rattus norvegicus
Q9ER34: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus

27% id,
18% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

35% id,
13% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory