Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides clarus YIT 12056 (GCF_900129655.1)

Found 27 curated entries in PaperBLAST's database that match '1.1.1.14' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Bacteroides clarus YIT 12056, or try another query

fabG BUB52_RS00055 SAMN05444376_0011 WP_005652328.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

PS417_11520: Sorbitol dehydrogenase (EC 1.1.1.14) from Pseudomonas simiae

36% id,
100% cov

Q5FNX9: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Gluconobacter oxydans

38% id,
97% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

35% id,
100% cov

More...

BUB52_RS10340 SAMN05444376_2116 WP_009122072.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

Q1J2J0: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Deinococcus geothermalis

34% id,
93% cov

BPHYT_RS16120: sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) from Burkholderia phytofirmans

30% id,
99% cov

Q5FNX9: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Gluconobacter oxydans

30% id,
96% cov

More...

BUB52_RS10260 SAMN05444376_2100 WP_009122055.1: gluconate 5-dehydrogenase
is similar to:
PaperBLAST

Q5FNX9: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Gluconobacter oxydans

33% id,
97% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

33% id,
97% cov

Q1J2J0: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Deinococcus geothermalis

34% id,
95% cov

More...

BUB52_RS14470 SAMN05444376_2959 WP_073212681.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Q1J2J0: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Deinococcus geothermalis

33% id,
96% cov

BUB52_RS00875 SAMN05444376_0179 WP_004289114.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Q5FNX9: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Gluconobacter oxydans

31% id,
99% cov

Q1J2J0: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Deinococcus geothermalis

32% id,
96% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

30% id,
97% cov

More...

BUB52_RS06870 SAMN05444376_1406 WP_009121335.1: alcohol dehydrogenase
is similar to:
PaperBLAST

Q5I6M4: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Malus domestica

31% id,
87% cov

NAD-SDH / Q9ZR22: D-sorbitol dehydrogenase (EC 1.1.1.14) from Malus domestica

31% id,
87% cov

Q3C2L6: L-iditol 2-dehydrogenase (EC 1.1.1.14) from Solanum lycopersicum

29% id,
90% cov

More...

BUB52_RS15230 SAMN05444376_3118 WP_009120431.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS16120: sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) from Burkholderia phytofirmans

33% id,
72% cov

SDH_CERSP / Q59787: Sorbitol dehydrogenase; SDH; Galactitol 2-dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; EC 1.1.1.-; EC 1.1.1.16; EC 1.1.1.14 from Cereibacter sphaeroides
polS / GI|2338763: L-iditol 2-dehydrogenase; EC 1.1.1.14 from Rhodobacter sphaeroides

32% id,
72% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

31% id,
72% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory