Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides clarus YIT 12056 (GCF_900129655.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.2.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacteroides clarus YIT 12056, or try another query

BUB52_RS13600 SAMN05444376_2782 WP_009121835.1: acetate kinase
is similar to:
PaperBLAST

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

54% id,
100% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

52% id,
100% cov

PDUW_SALTY / P74879: Propionate kinase PduW; EC 2.7.2.15 from Salmonella typhimurium

45% id,
96% cov

More...

purT BUB52_RS09320 SAMN05444376_1908 WP_009120825.1: formate-dependent phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

51% id,
96% cov

accC BUB52_RS09190 SAMN05444376_1880 WP_009120853.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

21% id,
97% cov

buk BUB52_RS11020 SAMN05444376_2255 WP_009122210.1: butyrate kinase
is similar to:
PaperBLAST

AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / P0A6A3: acetate kinase (EC 2.7.2.15; EC 2.7.2.7) from Escherichia coli

30% id,
42% cov

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

25% id,
40% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

23% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory