Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides clarus YIT 12056 (GCF_900129655.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacteroides clarus YIT 12056, or try another query

nagB BUB52_RS01160 SAMN05444376_0237 WP_009123066.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

NAGB_ECO57 / P0A760: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
NAGB_ECOLI / P0A759: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
GlmD / b0678: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli
nagB / PDB|1CD5: GlcN6P deaminase; EC 3.5.99.6 from Escherichia coli
nagB / P0A759: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli

66% id,
99% cov

U5LXR4: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

63% id,
99% cov

E1C878: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

60% id,
99% cov

More...

BUB52_RS12750 SAMN05444376_2609 WP_009120567.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

CA265_RS21925: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp.

52% id,
98% cov

NAGB_BACSU / O35000: Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC 3.5.99.6 from Bacillus subtilis
O35000: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Bacillus subtilis

41% id,
95% cov

Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Shewanella loihica

42% id,
89% cov

More...

glmS BUB52_RS09485 SAMN05444376_1941 WP_009123332.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

29% id,
97% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

28% id,
99% cov

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

31% id,
87% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory