Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurivirga caldicuralii DSM 17737 (GCF_900141795.1)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.22' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sulfurivirga caldicuralii DSM 17737, or try another query

BUQ81_RS07630 SAMN05443662_1535 WP_074201782.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

LADH_METJA / Q58806: Lactaldehyde dehydrogenase; EC 1.2.1.22 from Methanocaldococcus jannaschii
MJ1411 / Q58806: lactaldehyde dehydrogenase subunit (EC 1.2.1.22) from Methanocaldococcus jannaschii
Q58806: lactaldehyde dehydrogenase (EC 1.2.1.22) from Methanocaldococcus jannaschii

32% id,
97% cov

ladh / C1DMY3: NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) from Azotobacter vinelandii

31% id,
95% cov

ALDA_ECOLI / P25553: Lactaldehyde dehydrogenase; Aldehyde dehydrogenase A; Glycolaldehyde dehydrogenase; EC 1.2.1.22; EC 1.2.1.21 from Escherichia coli
Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
P25553: lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) from Escherichia coli

31% id,
94% cov

More...

BUQ81_RS07840 SAMN05443662_1582 WP_074201862.1: SDR family oxidoreductase
is similar to:
PaperBLAST

rhaEW / P40747: bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis

29% id,
39% cov

fabG BUQ81_RS03400 SAMN05443662_0684 WP_074200999.1: 3-oxoacyl-ACP reductase FabG
is similar to:
PaperBLAST

SMc02322: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti

30% id,
37% cov

Dshi_2436: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Dinoroseobacter shibae

29% id,
37% cov

rhaEW / P40747: bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis

29% id,
38% cov

BUQ81_RS05145 SAMN05443662_1034 WP_074201303.1: enoyl-ACP reductase
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

28% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory