Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurivirga caldicuralii DSM 17737 (GCF_900141795.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurivirga caldicuralii DSM 17737, or try another query

BUQ81_RS07475 SAMN05443662_1504 WP_084188303.1: type III PLP-dependent enzyme
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

34% id,
92% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

33% id,
95% cov

C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata

35% id,
87% cov

More...

lysA BUQ81_RS06980 SAMN05443662_1405 WP_074201663.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

25% id,
82% cov

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

25% id,
81% cov

DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus
P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus

27% id,
76% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory