Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurivirga caldicuralii DSM 17737 (GCF_900141795.1)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurivirga caldicuralii DSM 17737, or try another query

alr BUQ81_RS05015 SAMN05443662_1008 WP_074201279.1: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

26% id,
97% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

27% id,
85% cov

argC BUQ81_RS07205 SAMN05443662_1450 WP_074201703.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

37% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory