Curated BLAST for Genomes

 

Curated BLAST

Searching in Malonomonas rubra DSM 5091 (GCF_900142125.1)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Malonomonas rubra DSM 5091, or try another query

lpdA BUB13_RS05850 SAMN02745165_01178 WP_072906724.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

24% id,
46% cov

BUB13_RS16460 SAMN02745165_03332 WP_072909863.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

27% id,
24% cov

BUB13_RS16525 SAMN02745165_03345 WP_244151904.1: flavocytochrome c
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

39% id,
14% cov

BUB13_RS06865 SAMN02745165_01388 WP_072907176.1: NAD(P)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

30% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory