Curated BLAST for Genomes

 

Curated BLAST

Searching in Malonomonas rubra DSM 5091 (GCF_900142125.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Malonomonas rubra DSM 5091, or try another query

BUB13_RS08020 SAMN02745165_01621 WP_072907647.1: homocysteine S-methyltransferase family protein
is similar to:		 PaperBLAST

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 45% id,
100% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 44% id,
100% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 37% id,
99% cov

More...

BUB13_RS14570 SAMN02745165_02950 WP_072909508.1: vitamin B12 dependent-methionine synthase activation domain-containing protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 33% id,
95% cov

metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum

 42% id,
71% cov

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 33% id,
73% cov

More...

BUB13_RS14575 SAMN02745165_02951 WP_072909509.1: homocysteine S-methyltransferase family protein
is similar to:		 PaperBLAST

PGA1_c13370: Methionine synthase component, methyltransferase domain (EC:2.1.1.13) from Phaeobacter inhibens

 32% id,
85% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 35% id,
38% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 35% id,
35% cov

More...

BUB13_RS17065 SAMN02745165_03454 WP_072909978.1: cobalamin-dependent protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 26% id,
78% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 31% id,
26% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 31% id,
25% cov

More...

BUB13_RS04880 SAMN02745165_00983 WP_072906133.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 26% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

443906-445186 (frame -1) on NZ_FQZT01000002.1 Malonomonas rubra DSM 5091, whole genome shotgun sequence
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

 27% id,
62% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory