Curated BLAST
Searching in Malonomonas rubra DSM 5091 (GCF_900142125.1)
Found 8 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Malonomonas rubra DSM 5091, or try another query
leuD BUB13_RS11700 SAMN02745165_02370 WP_072908946.1: 3-isopropylmalate dehydratase small subunit
is similar to: | PaperBLAST |
leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans | 68% id,
97% cov |
LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium | 59% id,
97% cov |
LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii | 54% id,
99% cov |
LEUD_CORGL / Q8NQV7: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Corynebacterium glutamicum | 43% id,
98% cov |
LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis | 42% id,
93% cov |
LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana | 36% id,
49% cov |
LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 37% id,
47% cov |
LEUD1_ARATH / Q9ZW84: 3-isopropylmalate dehydratase small subunit 2; 2-(omega-methylthio)alkylmalate dehydratase small subunit 2; AtLEUD1; Isopropylmalate isomerase 2; Isopropylmalate isomerase small subunit 2; IPMI SSU2; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 33% id,
46% cov |
More... |
leuD BUB13_RS02525 SAMN02745165_00511 WP_072905199.1: 3-isopropylmalate dehydratase small subunit
is similar to: | PaperBLAST |
LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium | 37% id,
87% cov |
LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii | 33% id,
83% cov |
LEUD_CORGL / Q8NQV7: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Corynebacterium glutamicum | 33% id,
81% cov |
LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis | 34% id,
70% cov |
leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans | 32% id,
67% cov |
LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana | 41% id,
45% cov |
LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 40% id,
43% cov |
LEUD1_ARATH / Q9ZW84: 3-isopropylmalate dehydratase small subunit 2; 2-(omega-methylthio)alkylmalate dehydratase small subunit 2; AtLEUD1; Isopropylmalate isomerase 2; Isopropylmalate isomerase small subunit 2; IPMI SSU2; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 36% id,
45% cov |
More... |
acnA BUB13_RS12355 SAMN02745165_02506 WP_072909077.1: aconitate hydratase AcnA
is similar to: | PaperBLAST |
LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis | 28% id,
57% cov |
LEUD1_ARATH / Q9ZW84: 3-isopropylmalate dehydratase small subunit 2; 2-(omega-methylthio)alkylmalate dehydratase small subunit 2; AtLEUD1; Isopropylmalate isomerase 2; Isopropylmalate isomerase small subunit 2; IPMI SSU2; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 36% id,
26% cov |
LEUD_CORGL / Q8NQV7: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Corynebacterium glutamicum | 38% id,
24% cov |
LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii | 35% id,
25% cov |
LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana | 42% id,
21% cov |
LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 42% id,
21% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory