Curated BLAST for Genomes

 

Curated BLAST

Searching in Malonomonas rubra DSM 5091 (GCF_900142125.1)

Found 4 curated entries in PaperBLAST's database that match '3.5.1.20' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Malonomonas rubra DSM 5091, or try another query

BUB13_RS04170 SAMN02745165_00840 WP_072905910.1: carbon-nitrogen hydrolase
is similar to:
PaperBLAST

CTU_FRATT / Q5NHL7: Citrullinase; Citrulline ureidase; CTU; EC 3.5.1.20 from Francisella tularensis
ctu / Q5NHL7: citrullinase (EC 3.5.1.20) from Francisella tularensis
Q5NHL7: citrullinase (EC 3.5.1.20) from Francisella tularensis

39% id,
100% cov

BUB13_RS08695 SAMN02745165_01760 WP_072907951.1: carbon-nitrogen family hydrolase
is similar to:
PaperBLAST

CTU_FRATT / Q5NHL7: Citrullinase; Citrulline ureidase; CTU; EC 3.5.1.20 from Francisella tularensis
ctu / Q5NHL7: citrullinase (EC 3.5.1.20) from Francisella tularensis
Q5NHL7: citrullinase (EC 3.5.1.20) from Francisella tularensis

30% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory