Curated BLAST for Genomes

 

Curated BLAST

Searching in Malonomonas rubra DSM 5091 (GCF_900142125.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Malonomonas rubra DSM 5091, or try another query

BUB13_RS04490 SAMN02745165_00904 WP_072905987.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis

27% id,
86% cov

A0A1V3Y1D0: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus gasseri

28% id,
69% cov

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

32% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory