Curated BLAST for Genomes

 

Curated BLAST

Searching in Duganella sacchari Sac-22 (GCF_900143065.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Duganella sacchari Sac-22, or try another query

BUA36_RS20885 SAMN05192549_109185 WP_072787251.1: SIS domain-containing protein
is similar to:
PaperBLAST

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

59% id,
100% cov

PfGW456L13_4831: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

57% id,
99% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

57% id,
100% cov

More...

BUA36_RS18070 SAMN05192549_107380 WP_072786695.1: SIS domain-containing protein
is similar to:
PaperBLAST

AGAS_SHESA / A0KYQ7: D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp.

44% id,
92% cov

glmS BUA36_RS07360 SAMN05192549_103167 WP_072783034.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis

31% id,
98% cov

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

31% id,
95% cov

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

30% id,
99% cov

More...

BUA36_RS11225 SAMN05192549_104447 WP_072784433.1: 6-phosphogluconolactonase
is similar to:
PaperBLAST

NAGB_STRCO / Q9K487: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Streptomyces coelicolor

31% id,
92% cov

A8YZR7: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Staphylococcus aureus

29% id,
96% cov

NAGB_BACSU / O35000: Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC 3.5.99.6 from Bacillus subtilis
O35000: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Bacillus subtilis

28% id,
96% cov

More...

BUA36_RS22935 SAMN05192549_111136 WP_072787799.1: glucokinase
is similar to:
PaperBLAST

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

32% id,
43% cov

SO3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis

27% id,
42% cov

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis

29% id,
36% cov

More...

murQ BUA36_RS07810 SAMN05192549_103256 WP_072783187.1: N-acetylmuramic acid 6-phosphate etherase
is similar to:
PaperBLAST

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

23% id,
41% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

29% id,
24% cov

BUA36_RS06180 SAMN05192549_102442 WP_072782373.1: PIG-L family deacetylase
is similar to:
PaperBLAST

CA265_RS21925: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp.

36% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory