Curated BLAST for Genomes

 

Curated BLAST

Searching in Duganella sacchari Sac-22 (GCF_900143065.1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Duganella sacchari Sac-22, or try another query

BUA36_RS25770 SAMN05192549_11530 WP_072788965.1: threo-3-hydroxy-L-aspartate ammonia-lyase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

70% id,
100% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

42% id,
100% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

42% id,
93% cov

More...

ilvA BUA36_RS18985 SAMN05192549_108102 WP_072786890.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

34% id,
93% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

34% id,
92% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

32% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3782-5011 (frame -3) on NZ_FRCX01000001.1 Duganella sacchari strain Sac-22, whole genome shotgun sequence
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Gallus gallus

34% id,
81% cov

3729-3956 (frame -2) on NZ_FRCX01000001.1 Duganella sacchari strain Sac-22, whole genome shotgun sequence
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Gallus gallus

40% id,
23% cov

DSD1_YEAST / P53095: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Saccharomyces cerevisiae
P53095: D-Serine ammonia-lyase (EC 4.3.1.18) from Saccharomyces cerevisiae

36% id,
15% cov

DSD1_DICDI / Q54XE5: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Dictyostelium discoideum

38% id,
12% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory