Curated BLAST for Genomes

 

Curated BLAST

Searching in Williamsia sterculiae CPCC 203464 (GCF_900156495.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Williamsia sterculiae CPCC 203464, or try another query

BW971_RS14270 SAMN05445060_2899 WP_076480672.1: NAD-glutamate dehydrogenase
is similar to:
PaperBLAST

DHE2_MYCS2 / A0R1C2: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycolicibacterium smegmatis
A0R1C2: glutamate dehydrogenase (EC 1.4.1.2) from Mycolicibacterium smegmatis

50% id,
98% cov

DHE2_MYCTU / O53203: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycobacterium tuberculosis

50% id,
97% cov

Q8CJY0: glutamate dehydrogenase (EC 1.4.1.2) from Streptomyces coelicolor

44% id,
97% cov

More...

BW971_RS08255 SAMN05445060_1668 WP_076478451.1: LLM class flavin-dependent oxidoreductase
is similar to:
PaperBLAST

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

25% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory