Curated BLAST for Genomes

 

Curated BLAST

Searching in Williamsia sterculiae CPCC 203464 (GCF_900156495.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Williamsia sterculiae CPCC 203464, or try another query

tpiA BW971_RS06720 SAMN05445060_1360 WP_076477793.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_MYCTU / P9WG43: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Mycobacterium tuberculosis
P9WG43: triose-phosphate isomerase (EC 5.3.1.1) from Mycobacterium tuberculosis

77% id,
100% cov

TPIS_STRCO / Q9Z520: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Streptomyces coelicolor

68% id,
98% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

52% id,
94% cov

More...

BW971_RS06715 SAMN05445060_1359 WP_076477790.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

50% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory