Curated BLAST for Genomes

 

Curated BLAST

Searching in Paucidesulfovibrio gracilis DSM 16080 (GCF_900167125.1)

Found 32 curated entries in PaperBLAST's database that match '2.6.1.13' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Paucidesulfovibrio gracilis DSM 16080, or try another query

rocD B5D49_RS12615 SAMN02745704_02532 WP_078718069.1: ornithine--oxo-acid transaminase
is similar to:		 PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

 56% id,
98% cov

Echvi_0577: Ornithine aminotransferase (EC 2.6.1.13) from Echinicola vietnamensis

 54% id,
96% cov

Q3ZCF5: ornithine aminotransferase (EC 2.6.1.13) from Bos taurus

 55% id,
91% cov

More...

gabT B5D49_RS03155 SAMN02745704_00631 WP_078716203.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 41% id,
93% cov

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 42% id,
89% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 34% id,
93% cov

More...

B5D49_RS05850 SAMN02745704_01165 WP_078716728.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 39% id,
89% cov

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

 35% id,
99% cov

OAT_YEAST / P07991: Ornithine aminotransferase; OTAse; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

 34% id,
94% cov

More...

B5D49_RS14700 SAMN02745704_00636 WP_144019096.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

OAT_PLAF7 / Q6LFH8: Ornithine aminotransferase; PfOAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum
Q6LFH8: ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum

 32% id,
99% cov

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 32% id,
94% cov

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 30% id,
97% cov

More...

hemL B5D49_RS08095 SAMN02745704_01619 WP_078717186.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 32% id,
74% cov

OAT_SCHPO / Q9P7L5: Ornithine aminotransferase car2; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Schizosaccharomyces pombe
car2 / RF|NP_596588.1: ornithine transaminase Car2; EC 2.6.1.13 from Schizosaccharomyces pombe

 27% id,
88% cov

OAT_EMENI / Q92413: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Emericella nidulans
otaA: ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans

 27% id,
86% cov

More...

B5D49_RS08540 SAMN02745704_01708 WP_159447181.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

Q3ZCF5: ornithine aminotransferase (EC 2.6.1.13) from Bos taurus

 27% id,
70% cov

OAT_SCHPO / Q9P7L5: Ornithine aminotransferase car2; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Schizosaccharomyces pombe
car2 / RF|NP_596588.1: ornithine transaminase Car2; EC 2.6.1.13 from Schizosaccharomyces pombe

 26% id,
71% cov

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis

 27% id,
70% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

30097-31404 (frame +1) on NZ_FUYC01000006.1 Paucidesulfovibrio gracilis DSM 16080, whole genome shotgun sequence
is similar to:		 PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis
Also see hits to annotated proteins above

 29% id,
82% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory