Curated BLAST for Genomes

 

Curated BLAST

Searching in Paucidesulfovibrio gracilis DSM 16080 (GCF_900167125.1)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paucidesulfovibrio gracilis DSM 16080, or try another query

pheA B5D49_RS01230 SAMN02745704_00244 WP_078715825.1: prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

40% id,
97% cov

PHEA_METJA / Q58054: Prephenate dehydratase; PDT; MjPDT; EC 4.2.1.51 from Methanocaldococcus jannaschii

30% id,
99% cov

PHEA_MYCBO / Q7TVJ6: Prephenate dehydratase; PDT; EC 4.2.1.51 from Mycobacterium bovis
PHEA_MYCTU / P9WIC3: Prephenate dehydratase; PDT; EC 4.2.1.51 from Mycobacterium tuberculosis
P9WIC3: prephenate dehydratase (EC 4.2.1.51) from Mycobacterium tuberculosis

33% id,
88% cov

More...

B5D49_RS06900 SAMN02745704_01379 WP_078716949.1: transporter substrate-binding domain-containing protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

29% id,
91% cov

B5D49_RS05285 SAMN02745704_01053 WP_078716628.1: transporter substrate-binding domain-containing protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

27% id,
95% cov

B5D49_RS12100 SAMN02745704_02428 WP_078717973.1: amino acid ABC transporter substrate-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

28% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory