Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

B5X82_RS01105 SAMN06295920_101225 WP_079646200.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

42% id,
93% cov

B5X82_RS24480 SAMN06295920_12027 WP_079650953.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

41% id,
94% cov

B5X82_RS04510 SAMN06295920_102158 WP_079646921.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

41% id,
94% cov

B5X82_RS17375 SAMN06295920_10874 WP_079649446.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

40% id,
94% cov

B5X82_RS03120 SAMN06295920_101631 WP_079646552.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

37% id,
94% cov

B5X82_RS22205 SAMN06295920_11360 WP_079650409.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

37% id,
94% cov

B5X82_RS11300 SAMN06295920_104369 WP_079648256.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

34% id,
94% cov

mmsB B5X82_RS18185 SAMN06295920_108236 WP_139385133.1: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

32% id,
72% cov

B5X82_RS15920 SAMN06295920_10764 WP_176152585.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

38% id,
53% cov

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

35% id,
38% cov

B5X82_RS19685 SAMN06295920_11075 WP_079649879.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

37% id,
53% cov

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

52% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

235849-237831 (frame +1) on NZ_FUYM01000001.1 Rhizorhabdus histidinilytica strain UM2, whole genome shotgun sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

41% id,
97% cov

71307-73142 (frame +3) on NZ_FUYM01000008.1 Rhizorhabdus histidinilytica strain UM2, whole genome shotgun sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

39% id,
97% cov

652383-654311 (frame -2) on NZ_FUYM01000001.1 Rhizorhabdus histidinilytica strain UM2, whole genome shotgun sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

36% id,
98% cov

390029-391801 (frame +2) on NZ_FUYM01000004.1 Rhizorhabdus histidinilytica strain UM2, whole genome shotgun sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

34% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory