Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

B5X82_RS12000 SAMN06295920_10513 WP_079648414.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

25% id,
96% cov

B5X82_RS11720 SAMN06295920_104454 WP_079648336.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

27% id,
60% cov

B5X82_RS24390 SAMN06295920_1209 WP_176152692.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

25% id,
32% cov

B5X82_RS19150 SAMN06295920_109194 WP_176152624.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

38% id,
14% cov

B5X82_RS06770 SAMN06295920_10326 WP_079647371.1: sarcosine oxidase subunit alpha family protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

47% id,
11% cov

B5X82_RS18600 SAMN06295920_10983 WP_079649678.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

37% id,
14% cov

B5X82_RS05025 SAMN06295920_102261 WP_125725186.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

37% id,
11% cov

B5X82_RS02620 SAMN06295920_101531 WP_079646461.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

51% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory