Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 26 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

gcvH B5X82_RS12935 SAMN06295920_105205 WP_079648575.1: glycine cleavage system protein GcvH
is similar to:		 PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 47% id,
71% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 45% id,
69% cov

gcvPB B5X82_RS12945 SAMN06295920_105207 WP_079648577.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPB
is similar to:		 PaperBLAST

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

 40% id,
45% cov

BPHYT_RS19330: glycine cleavage system P protein (EC 1.4.4.2) from Burkholderia phytofirmans

 39% id,
46% cov

GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli
GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli
gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli
gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli

 39% id,
45% cov

More...

gcvPA B5X82_RS12940 SAMN06295920_105206 WP_079648576.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPA
is similar to:		 PaperBLAST

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 35% id,
45% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 35% id,
45% cov

BPHYT_RS19330: glycine cleavage system P protein (EC 1.4.4.2) from Burkholderia phytofirmans

 34% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory