Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 64 curated entries in PaperBLAST's database that match '2.4.2.1' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

mtnP B5X82_RS09320 SAMN06295920_103545 WP_079647858.1: S-methyl-5'-thioadenosine phosphorylase
is similar to:
PaperBLAST

flB / Q1EMV9: 5'-fluoro-5'-deoxy-adenosine phosphorylase (EC 2.4.2.1) from Streptantibioticus cattleyicolor

50% id,
94% cov

salT / B0L7E7: chloro-purine nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica
B0L7E7: purine-nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica

46% id,
88% cov

Q97W94: purine-nucleoside phosphorylase (EC 2.4.2.1); S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Saccharolobus solfataricus

45% id,
88% cov

More...

tpiA B5X82_RS18460 SAMN06295920_10955 WP_079649654.1: triose-phosphate isomerase
is similar to:
PaperBLAST

P00941: purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens

40% id,
96% cov

pgeF B5X82_RS00775 SAMN06295920_101160 WP_079646138.1: peptidoglycan editing factor PgeF
is similar to:
PaperBLAST

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

36% id,
90% cov

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

35% id,
91% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

31% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

516415-517425 (frame -2) on NZ_FUYM01000003.1 Rhizorhabdus histidinilytica strain UM2, whole genome shotgun sequence
is similar to:
PaperBLAST

flB / Q1EMV9: 5'-fluoro-5'-deoxy-adenosine phosphorylase (EC 2.4.2.1) from Streptantibioticus cattleyicolor
Also see hits to annotated proteins above

49% id,
99% cov

Q9BMI9: purine-nucleoside phosphorylase (EC 2.4.2.1) from Schistosoma mansoni
Also see hits to annotated proteins above

27% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory