Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 3 curated entries in PaperBLAST's database that match '3.1.1.110' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

B5X82_RS02675 SAMN06295920_101542 WP_079646471.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

XYLC_CAUVC / Q9A9Z1: D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides
xylC / A0A0H3C6P8: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides
Q9A9Z1: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides

36% id,
97% cov

B5X82_RS23675 SAMN06295920_11719 WP_235862786.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

XYLC_CAUVC / Q9A9Z1: D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides
xylC / A0A0H3C6P8: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides
Q9A9Z1: xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides

32% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory