Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

B5X82_RS16915 SAMN06295920_107265 WP_079649349.1: PQQ-binding-like beta-propeller repeat protein
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory