Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizorhabdus histidinilytica UM2 (GCF_900167915.1)

Found 7 curated entries in PaperBLAST's database that match 'glutamylputrescine oxidase' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizorhabdus histidinilytica UM2, or try another query

B5X82_RS19150 SAMN06295920_109194 WP_176152624.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Pf6N2E2_80: gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens

29% id,
94% cov

AO356_21495: gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens

29% id,
91% cov

PP_2448: Gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas putida

28% id,
93% cov

B5X82_RS21350 SAMN06295920_111194 WP_079650193.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

PUUB_ECOLI / P37906: Gamma-glutamylputrescine oxidoreductase; Gamma-Glu-Put oxidase; Gamma-glutamylputrescine oxidase; EC 1.4.3.- from Escherichia coli
YcjA / b1301: γ-glutamylputrescine oxidase from Escherichia coli
puuB / P37906: γ-glutamylputrescine oxidase from Escherichia coli
puuB / BAD88709.1: gamma-glutamylputrescine oxidase from Escherichia coli

31% id,
20% cov

B5X82_RS24390 SAMN06295920_1209 WP_176152692.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

PUUB_ECOLI / P37906: Gamma-glutamylputrescine oxidoreductase; Gamma-Glu-Put oxidase; Gamma-glutamylputrescine oxidase; EC 1.4.3.- from Escherichia coli
YcjA / b1301: γ-glutamylputrescine oxidase from Escherichia coli
puuB / P37906: γ-glutamylputrescine oxidase from Escherichia coli
puuB / BAD88709.1: gamma-glutamylputrescine oxidase from Escherichia coli

35% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory