Curated BLAST for Genomes

 

Curated BLAST

Searching in Brevibacterium jeotgali SJ5-8 (GCF_900169175.1)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.117' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Brevibacterium jeotgali SJ5-8, or try another query

acnA BJEO58_RS11005 BJEO58_02194 WP_101589524.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

46% id,
94% cov

BJEO58_RS10120 BJEO58_02015 WP_101589352.1: aconitate hydratase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

37% id,
27% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

38% id,
14% cov

leuD BJEO58_RS04150 BJEO58_00828 WP_101587993.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
acnD / Q8EJW3: 2-methylcitrate dehydratase (EC 4.2.1.117) from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

27% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory