Curated BLAST for Genomes

 

Curated BLAST

Searching in Brevibacterium jeotgali SJ5-8 (GCF_900169175.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Brevibacterium jeotgali SJ5-8, or try another query

BJEO58_RS08765 BJEO58_01745 WP_101589080.1: aromatic acid/H+ symport family MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

23% id,
62% cov

BJEO58_RS01275 BJEO58_00253 WP_101587018.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

29% id,
41% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

25% id,
37% cov

BJEO58_RS13485 BJEO58_02688 WP_101589991.1: MFS transporter
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

30% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory