Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitratiruptor tergarcus DSM 16512 (GCF_900176045.1)

Found 12 curated entries in PaperBLAST's database that match '1.1.1.282' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Nitratiruptor tergarcus DSM 16512, or try another query

B8779_RS08930 SAMN05660197_1809 WP_084276339.1: ThiF family adenylyltransferase
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

44% id,
13% cov

B8779_RS05760 SAMN05660197_1165 WP_084275591.1: shikimate dehydrogenase
is similar to:
PaperBLAST

A0A3Q7H2B2: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Solanum lycopersicum

34% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory