Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitratiruptor tergarcus DSM 16512 (GCF_900176045.1)

Found 3 curated entries in PaperBLAST's database that match 'propionyl-CoA synthetase' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Nitratiruptor tergarcus DSM 16512, or try another query

acs B8779_RS04840 SAMN05660197_0981 WP_084275418.1: acetate--CoA ligase
is similar to:
PaperBLAST

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

40% id,
100% cov

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

40% id,
100% cov

B8779_RS05035 SAMN05660197_1019 WP_084275454.1: fatty acid--CoA ligase
is similar to:
PaperBLAST

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

23% id,
87% cov

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

26% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory