Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.17' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

serC B9A12_RS07725 SAMN02746041_01558 WP_084057322.1: 3-phosphoserine/phosphohydroxythreonine transaminase
is similar to:
PaperBLAST

SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli
serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli

47% id,
99% cov

B9A12_RS04090 SAMN02746041_00827 WP_139796485.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

46% id,
99% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

44% id,
93% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

43% id,
93% cov

B9A12_RS03895 SAMN02746041_00789 WP_084056489.1: acetyl ornithine aminotransferase family protein
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

35% id,
99% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

36% id,
96% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

36% id,
96% cov

B9A12_RS04135 SAMN02746041_00836 WP_084056582.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

Q82IK5: succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Streptomyces avermitilis

34% id,
98% cov

Q8NRE6: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Corynebacterium glutamicum

30% id,
98% cov

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

30% id,
97% cov

alaC B9A12_RS09460 SAMN02746041_01909 WP_084057643.1: alanine transaminase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

33% id,
97% cov

B9A12_RS02895 SAMN02746041_00585 WP_084056111.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

30% id,
97% cov

B9A12_RS05520 SAMN02746041_01114 WP_212636831.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

30% id,
93% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

30% id,
93% cov

B9A12_RS05220 SAMN02746041_01054 WP_084056822.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

Q8NRE6: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Corynebacterium glutamicum

29% id,
95% cov

B9A12_RS02325 SAMN02746041_00469 WP_084055920.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

27% id,
99% cov

B9A12_RS14665 SAMN02746041_02954 WP_084058855.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

27% id,
97% cov

hemL B9A12_RS09975 SAMN02746041_02011 WP_084057747.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

32% id,
74% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

32% id,
71% cov

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

28% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory