Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

B9A12_RS00985 SAMN02746041_00199 WP_084055959.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

40% id,
92% cov

ispE B9A12_RS06350 WP_084057044.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

26% id,
85% cov

N515DRAFT_0576: homoserine kinase (EC 2.7.1.39) from Dyella japonica

27% id,
68% cov

cmk B9A12_RS10620 SAMN02746041_02141 WP_084057875.1: (d)CMP kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

37% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory