Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)
Found 8 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query
| leuD B9A12_RS09565 SAMN02746041_01929 WP_281247911.1: 3-isopropylmalate dehydratase small subunit is similar to: | PaperBLAST |
LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium | 34% id, 81% cov |
LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana | 37% id, 68% cov |
LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii | 40% id, 63% cov |
| acnA B9A12_RS07905 SAMN02746041_01592 WP_084057352.1: aconitate hydratase AcnA is similar to: | PaperBLAST |
leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans | 30% id, 58% cov |
LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana | 27% id, 58% cov |
LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii | 28% id, 53% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 5685-5852 (frame -3) on NZ_FWXF01000008.1 Desulfacinum hydrothermale DSM 13146, whole genome shotgun sequence is similar to: | PaperBLAST |
LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana | 37% id, 20% cov |
Lawrence Berkeley National Laboratory