Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

thrC B9A12_RS00450 SAMN02746041_00091 WP_084055578.1: threonine synthase
is similar to:
PaperBLAST

DvMF_1945: threonine synthase (EC 4.2.3.1) from Desulfovibrio vulgaris

61% id,
97% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

34% id,
95% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

34% id,
93% cov

More...

ilvA B9A12_RS12145 SAMN02746041_02446 WP_084058176.1: threonine ammonia-lyase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

25% id,
89% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

27% id,
82% cov

B9A12_RS01525 SAMN02746041_00309 WP_084055774.1: pyridoxal-phosphate dependent enzyme
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory