Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 5 curated entries in PaperBLAST's database that match 'anthranilate synthase alpha subunit' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

B9A12_RS13790 SAMN02746041_02769 WP_084058692.1: anthranilate synthase component I family protein
is similar to:
PaperBLAST

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

36% id,
98% cov

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

38% id,
90% cov

ASA2_ORYSJ / Q9XJ29: Anthranilate synthase alpha subunit 2, chloroplastic; OsASA2; EC 4.1.3.27 from Oryza sativa

39% id,
87% cov

More...

pabB B9A12_RS02225 SAMN02746041_00450 WP_139796441.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

31% id,
84% cov

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

42% id,
57% cov

PHNA_PSEAE / P09785: Anthranilate synthase component 1, pyocyanine specific; AS; ASI; Anthranilate synthase alpha subunit, pyocyanine specific; EC 4.1.3.27 from Pseudomonas aeruginosa

33% id,
70% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

482089-484242 (frame -1) on NZ_FWXF01000001.1 Desulfacinum hydrothermale DSM 13146, whole genome shotgun sequence
is similar to:
PaperBLAST

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa
Also see hits to annotated proteins above

30% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory