Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%small' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

carA B9A12_RS11085 SAMN02746041_02231 WP_084057965.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

43% id,
97% cov

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

49% id,
36% cov

B9A12_RS13785 SAMN02746041_02768 WP_084058691.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

34% id,
43% cov

guaA B9A12_RS10650 SAMN02746041_02147 WP_084057881.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

28% id,
52% cov

B9A12_RS02230 SAMN02746041_00451 WP_084055903.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

30% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory