Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfacinum hydrothermale DSM 13146 (GCF_900176285.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfacinum hydrothermale DSM 13146, or try another query

ilvB B9A12_RS09535 SAMN02746041_01923 WP_084057655.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

55% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

51% id,
93% cov

B9A12_RS00190 SAMN02746041_00039 WP_084055533.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

31% id,
93% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

28% id,
94% cov

B9A12_RS05965 SAMN02746041_01207 WP_084056979.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

27% id,
93% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

27% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

38871-40967 (frame +3) on NZ_FWXF01000001.1 Desulfacinum hydrothermale DSM 13146, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

30% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory