Curated BLAST for Genomes

 

Curated BLAST

Searching in Tistlia consotensis USBA 355 (GCF_900177295.1)

Found 2 curated entries in PaperBLAST's database that match '2.7.1.13' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Tistlia consotensis USBA 355, or try another query

B9O00_RS13785 SAMN05428998_11045 WP_085123269.1: carbohydrate kinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

33% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

270813-271826 (frame +3) on NZ_FWZX01000001.1 Tistlia consotensis USBA 355, whole genome shotgun sequence
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

32% id,
97% cov

41795-43582 (frame +2) on NZ_FWZX01000010.1 Tistlia consotensis USBA 355, whole genome shotgun sequence
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

31% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory