Curated BLAST for Genomes

 

Curated BLAST

Searching in Tistlia consotensis USBA 355 (GCF_900177295.1)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Tistlia consotensis USBA 355, or try another query

manD B9O00_RS19840 SAMN05428998_11887 WP_085124469.1: D-mannonate dehydratase ManD
is similar to:		 PaperBLAST

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

 79% id,
100% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

 76% id,
100% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

 73% id,
100% cov

More...

B9O00_RS27750 SAMN05428998_13612 WP_085125981.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

 30% id,
98% cov

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

 29% id,
98% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

 29% id,
100% cov

More...

B9O00_RS20445 SAMN05428998_11989 WP_085124585.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

 30% id,
86% cov

MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum

 24% id,
77% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

 31% id,
30% cov

More...

B9O00_RS01885 SAMN05428998_101377 WP_085120723.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

 27% id,
93% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

 27% id,
93% cov

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

 27% id,
93% cov

More...

B9O00_RS27415 SAMN05428998_1357 WP_085125916.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

 27% id,
93% cov

MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus

 24% id,
93% cov

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

 25% id,
88% cov

More...

B9O00_RS06885 SAMN05428998_10419 WP_085121732.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

 28% id,
91% cov

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

 27% id,
92% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

 26% id,
92% cov

More...

B9O00_RS29410 SAMN05428998_14211 WP_085126531.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

 25% id,
96% cov

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

 28% id,
87% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

 24% id,
96% cov

More...

B9O00_RS01505 SAMN05428998_101302 WP_085120654.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

 28% id,
86% cov

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

 25% id,
86% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

 28% id,
49% cov

More...

B9O00_RS26155 SAMN05428998_13118 WP_085125673.1: enolase C-terminal domain-like protein
is similar to:		 PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

 27% id,
81% cov

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

 23% id,
87% cov

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

 29% id,
51% cov

More...

B9O00_RS19090 SAMN05428998_11769 WP_085124302.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

 23% id,
95% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

 23% id,
92% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

 23% id,
90% cov

More...

B9O00_RS17980 SAMN05428998_115127 WP_085124084.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

 25% id,
58% cov

MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae

 26% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

84397-85974 (frame -1) on NZ_FWZX01000019.1 Tistlia consotensis USBA 355, whole genome shotgun sequence
is similar to:		 PaperBLAST

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.
Also see hits to annotated proteins above

 30% id,
89% cov

313445-314608 (frame +2) on NZ_FWZX01000001.1 Tistlia consotensis USBA 355, whole genome shotgun sequence
is similar to:		 PaperBLAST

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.
Also see hits to annotated proteins above

 27% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory